http://rna.sysu.edu.cn/chipbase/ WebChIPBase v3.0 identified ~151,187,000 regulatory relationships between ~171,600 genes and ~3,000 regulators by analyzing ~55,000 ChIP-seq datasets, which represent a 30 …

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WebThe current release of ChIPBase includes high-throughput sequencing data that were generated by 543 ChIP-Seq experiments in diverse tissues and cell lines from six … WebOct 23, 2016 · In this study, we developed ChIPBase v2.0 ( http://rna.sysu.edu.cn/chipbase/) to explore the transcriptional regulatory networks of ncRNAs and PCGs. ChIPBase v2.0 has been expanded with ∼10 200 curated ChIP-seq datasets, which represent about 20 times expansion when comparing to the previous … flying scotsman cartoon

ChIPBase v3.0: the encyclopedia of transcriptional regulations of …

WebFor example, ChIPBase can be used to identify that the liver-specific miR-122 is regulated by three liver-enriched TFs , and that the linc2048 lncRNA is regulated by embryonic stem cell (ESC)-associated transcription factors . In addition, the integration of a large quantity of ChIP-Seq data from diverse tissues and cell lines allows us to ... WebNov 18, 2024 · ChIPBase will serve as a useful resource to facilitate integrative explorations and expand our understanding of transcriptional regulation. INTRODUCTION Eukaryotic … WebMotif provides users with a platform to visulize the binding motifs of transcription factors by de novo analyzing the ChIP-Seq data. In ChIPBase, all the motifs data are display as PWMs, visualized motif logos and binding sites.. How to use: 1) Select factor: Pull down the "Protein factor" menu to get your interested factor. 2) Select experiment and browse: You … green mill thanksgiving meal